MDAqc sample report

Sample Summary Table

variance label P(bad) P(good) Chrom: pass Chrom: warn Chrom: fail
1465_MDA_2.0.1x 0.002080 good 0.061549 0.938451 [1, 10, 11, 12, 13, 14, 18, 2, 3, 4, 5, 6, 7, ... [15] [16, 17, 19, 20, 21, 22]
1465_MDA_24.0.1x 0.001630 good 0.056451 0.943549 [1, 10, 11, 12, 13, 14, 15, 18, 2, 3, 4, 5, 7, 9] [21, 6, 8] [16, 17, 19, 20, 22]
1465_MDA_30.0.1x 0.001569 good 0.069549 0.930451 [1, 10, 11, 12, 13, 14, 15, 18, 2, 3, 5, 6, 7,... [4] [16, 17, 19, 20, 21, 22]
1465_p1C10.0.1x 0.004611 bad 0.833963 0.166037 [1, 10, 11, 12, 13, 14, 16, 18, 2, 4, 5, 6, 7] [20, 8, 9] [15, 17, 19, 21, 22, 3]
1465_p1C12.0.1x 0.007469 bad 0.776175 0.223825 [10, 11, 12, 14, 17, 18, 2, 21, 3, 4, 5, 8, 9] [15, 22] [1, 13, 16, 19, 20, 6, 7]
1465_p1C7.0.1x 0.005668 bad 0.782075 0.217925 [1, 10, 11, 12, 13, 14, 15, 18, 2, 21, 3, 5, 6... [20] [16, 17, 19, 22, 4]
1465_p1E6.0.1x 0.006291 bad 0.793652 0.206348 [1, 10, 11, 12, 13, 14, 15, 16, 2, 21, 3, 5, 6... [4] [17, 18, 19, 20, 22, 9]
1465_p1E8.0.1x 0.007315 bad 0.757195 0.242805 [1, 10, 11, 12, 13, 14, 15, 2, 20, 3, 4, 5, 6,... [] [16, 17, 18, 19, 21, 22]
4638_MDA_13.0.1x 0.001930 good 0.013114 0.986886 [1, 10, 11, 12, 13, 14, 15, 16, 20, 3, 6, 7, 8... [21, 4] [17, 18, 19, 2, 22, 5]
4638_MDA_4.0.1x 0.001953 good 0.018390 0.981610 [1, 10, 11, 13, 14, 18, 21, 3, 4, 5, 6, 7, 8, 9] [20] [12, 15, 16, 17, 19, 2, 22]
4638_MDA_7.0.1x 0.001909 good 0.012189 0.987811 [1, 10, 11, 13, 14, 15, 18, 3, 4, 5, 6, 7, 8, 9] [] [12, 16, 17, 19, 2, 20, 21, 22]

Sample Clustering

Chromosome Outlier Plots

Sample Periodograms

Sample Autocorrelation